Detailed information of SNP:
|
SNP ID:
sf0432482973(Gbrowse)
Chromosome: chr04 Position: 32482973 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 62.46% | 37.54% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 496 | 9.88% | 90.12% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432482973 | C->T | LOC_Os04g54920(LOC_Os04g54920.1) | Non-Synonymous SNP |