Detailed information of SNP:
|
SNP ID:
sf0432488253(Gbrowse)
Chromosome: chr04 Position: 32488253 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 77.03% | 22.97% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 497 | 44.06% | 55.94% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 34.93% | 65.07% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432488253 | T->A | LOC_Os04g54930(LOC_Os04g54930.1) | INTRON |