Detailed information of SNP:
|
SNP ID:
sf0432493491(Gbrowse)
Chromosome: chr04 Position: 32493491 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.14% | 38.86% |
| All Indica | 799 | 95.49% | 4.51% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432493491 | G->A | INTERGENIC | None |