Detailed information of SNP:
|
SNP ID:
sf0432500463(Gbrowse)
Chromosome: chr04 Position: 32500463 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 64.53% | 35.47% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 497 | 14.69% | 85.31% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432500463 | T->G | LOC_Os04g54940(LOC_Os04g54940.1) | INTRON |