Detailed information of SNP:
SNP ID:
sf0432500463(Gbrowse)
Chromosome: chr04 Position: 32500463 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 64.53% | 35.47% |
All Indica | 799 | 96.25% | 3.75% |
All Japonica | 497 | 14.69% | 85.31% |
Aus | 67 | 62.69% | 37.31% |
Indica I | 375 | 93.60% | 6.40% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 97.63% | 2.37% |
Temperate Japonica | 335 | 1.79% | 98.21% |
Tropical Japonica | 94 | 65.96% | 34.04% |
Japonica Intermediate | 68 | 7.35% | 92.65% |
Group VI/Aromatic | 14 | 35.71% | 64.29% |
Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0432500463 | T->G | LOC_Os04g54940(LOC_Os04g54940.1) | INTRON |