Detailed information of SNP:
|
SNP ID:
sf0432507603(Gbrowse)
Chromosome: chr04 Position: 32507603 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 86.19% | 13.81% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 67.20% | 32.80% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 65.67% | 34.33% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432507603 | G->C | INTERGENIC | None |