Detailed information of SNP:
|
SNP ID:
sf0432509071(Gbrowse)
Chromosome: chr04 Position: 32509071 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 86.59% | 13.41% |
| All Indica | 798 | 97.62% | 2.38% |
| All Japonica | 496 | 68.15% | 31.85% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 66.77% | 33.23% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432509071 | G->A | INTERGENIC | None |