Detailed information of SNP:
|
SNP ID:
sf0432513565(Gbrowse)
Chromosome: chr04 Position: 32513565 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 74.65% | 25.35% |
| All Indica | 798 | 97.99% | 2.01% |
| All Japonica | 495 | 37.58% | 62.42% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 32.63% | 67.37% |
| Tropical Japonica | 93 | 33.33% | 66.67% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432513565 | G->A | INTERGENIC | None |