Detailed information of SNP:
|
SNP ID:
sf0432516104(Gbrowse)
Chromosome: chr04 Position: 32516104 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 61.24% | 38.76% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 6.44% | 93.56% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432516104 | T->C | INTERGENIC | None |