Detailed information of SNP:
|
SNP ID:
sf0432529496(Gbrowse)
Chromosome: chr04 Position: 32529496 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 52.46% | 47.54% |
| All Indica | 751 | 84.95% | 15.05% |
| All Japonica | 494 | 4.66% | 95.34% |
| Aus | 64 | 51.56% | 48.44% |
| Indica I | 344 | 83.43% | 16.57% |
| Indica II | 207 | 92.75% | 7.25% |
| Indica Intermediate | 200 | 79.50% | 20.50% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 23.66% | 76.34% |
| Japonica Intermediate | 66 | 0.00% | 100.00% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432529496 | A->T | LOC_Os04g55020(LOC_Os04g55020.1) | Non-Synonymous SNP |