Detailed information of SNP:
|
SNP ID:
sf0432533601(Gbrowse)
Chromosome: chr04 Position: 32533601 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 68.80% | 31.20% |
| All Indica | 780 | 94.10% | 5.90% |
| All Japonica | 476 | 29.41% | 70.59% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 364 | 93.13% | 6.87% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 205 | 95.12% | 4.88% |
| Temperate Japonica | 330 | 19.09% | 80.91% |
| Tropical Japonica | 82 | 42.68% | 57.32% |
| Japonica Intermediate | 64 | 65.62% | 34.38% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432533601 | T->C | LOC_Os04g55020(LOC_Os04g55020.1) | Synonymous |