Detailed information of SNP:
|
SNP ID:
sf0432540006(Gbrowse)
Chromosome: chr04 Position: 32540006 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 60.96% | 39.04% |
| All Indica | 795 | 95.60% | 4.40% |
| All Japonica | 497 | 6.44% | 93.56% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 95.67% | 4.33% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432540006 | A->G | INTERGENIC | None |