Detailed information of SNP:
|
SNP ID:
sf0432547273(Gbrowse)
Chromosome: chr04 Position: 32547273 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 75.53% | 24.47% |
| All Indica | 798 | 98.50% | 1.50% |
| All Japonica | 497 | 39.64% | 60.36% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 23.28% | 76.72% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432547273 | T->C | INTERGENIC | None |