Detailed information of SNP:
|
SNP ID:
sf0432550729(Gbrowse)
Chromosome: chr04 Position: 32550729 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 61.38% | 38.62% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 6.44% | 93.56% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432550729 | G->T | INTERGENIC | None |