Detailed information of SNP:
|
SNP ID:
sf0432562754(Gbrowse)
Chromosome: chr04 Position: 32562754 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 68.38% | 31.62% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 495 | 26.67% | 73.33% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 333 | 17.72% | 82.28% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432562754 | A->G | LOC_Os04g55070(LOC_Os04g55070.1) | INTRON |