Detailed information of SNP:
|
SNP ID:
sf0432564049(Gbrowse)
Chromosome: chr04 Position: 32564049 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 97.03% | 2.97% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 461 | 91.54% | 8.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 310 | 90.97% | 9.03% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 58 | 86.21% | 13.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432564049 | G->A | LOC_Os04g55070(LOC_Os04g55070.1) | INTRON |