Detailed information of SNP:
|
SNP ID:
sf0432599879(Gbrowse)
Chromosome: chr04 Position: 32599879 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 71.60% | 28.40% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 34.21% | 65.79% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 18.81% | 81.19% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432599879 | T->C | LOC_Os04g55140(LOC_Os04g55140.1) | Non-Synonymous SNP |