Detailed information of SNP:



SNP ID: sf0432630937(Gbrowse)

Chromosome: chr04

Position: 32630937
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1367 61.59% 38.41%
All Indica753 86.32% 13.68%
All Japonica494 25.71% 74.29%
Aus65 55.38% 44.62%
Indica I353 81.59% 18.41%
Indica II200 93.50% 6.50%
Indica Intermediate200 87.50% 12.50%
Temperate Japonica334 15.57% 84.43%
Tropical Japonica92 43.48% 56.52%
Japonica Intermediate68 51.47% 48.53%
Group VI/Aromatic14 35.71% 64.29%
Intermediate41 58.54% 41.46%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0432630937 C->T INTERGENIC None