Detailed information of SNP:
|
SNP ID:
sf0432630937(Gbrowse)
Chromosome: chr04 Position: 32630937 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1367 | 61.59% | 38.41% |
| All Indica | 753 | 86.32% | 13.68% |
| All Japonica | 494 | 25.71% | 74.29% |
| Aus | 65 | 55.38% | 44.62% |
| Indica I | 353 | 81.59% | 18.41% |
| Indica II | 200 | 93.50% | 6.50% |
| Indica Intermediate | 200 | 87.50% | 12.50% |
| Temperate Japonica | 334 | 15.57% | 84.43% |
| Tropical Japonica | 92 | 43.48% | 56.52% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432630937 | C->T | INTERGENIC | None |