Detailed information of SNP:
SNP ID:
sf0432630937(Gbrowse)
Chromosome: chr04 Position: 32630937 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1367 | 61.59% | 38.41% |
All Indica | 753 | 86.32% | 13.68% |
All Japonica | 494 | 25.71% | 74.29% |
Aus | 65 | 55.38% | 44.62% |
Indica I | 353 | 81.59% | 18.41% |
Indica II | 200 | 93.50% | 6.50% |
Indica Intermediate | 200 | 87.50% | 12.50% |
Temperate Japonica | 334 | 15.57% | 84.43% |
Tropical Japonica | 92 | 43.48% | 56.52% |
Japonica Intermediate | 68 | 51.47% | 48.53% |
Group VI/Aromatic | 14 | 35.71% | 64.29% |
Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0432630937 | C->T | INTERGENIC | None |