Detailed information of SNP:
|
SNP ID:
sf0432631152(Gbrowse)
Chromosome: chr04 Position: 32631152 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1312 | 94.05% | 5.95% |
| All Indica | 777 | 92.28% | 7.72% |
| All Japonica | 418 | 98.09% | 1.91% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 366 | 92.62% | 7.38% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 203 | 89.16% | 10.84% |
| Temperate Japonica | 292 | 98.97% | 1.03% |
| Tropical Japonica | 84 | 98.81% | 1.19% |
| Japonica Intermediate | 42 | 90.48% | 9.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432631152 | A->G | INTERGENIC | None |