Detailed information of SNP:
|
SNP ID:
sf0432631543(Gbrowse)
Chromosome: chr04 Position: 32631543 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1376 | 57.99% | 42.01% |
| All Indica | 769 | 82.70% | 17.30% |
| All Japonica | 488 | 21.72% | 78.28% |
| Aus | 64 | 43.75% | 56.25% |
| Indica I | 357 | 75.91% | 24.09% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 202 | 83.66% | 16.34% |
| Temperate Japonica | 327 | 12.54% | 87.46% |
| Tropical Japonica | 93 | 36.56% | 63.44% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432631543 | C->T | INTERGENIC | None |