Detailed information of SNP:
|
SNP ID:
sf0432631716(Gbrowse)
Chromosome: chr04 Position: 32631716 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.35% | 32.65% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 26.16% | 73.84% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 16.72% | 83.28% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432631716 | T->A | INTERGENIC | None |