Detailed information of SNP:
|
SNP ID:
sf0432675533(Gbrowse)
Chromosome: chr04 Position: 32675533 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 61.59% | 38.41% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 7.24% | 92.76% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432675533 | T->G | INTERGENIC | None |