Detailed information of SNP:
|
SNP ID:
sf0432677958(Gbrowse)
Chromosome: chr04 Position: 32677958 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 61.02% | 38.98% |
| All Indica | 798 | 95.36% | 4.64% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432677958 | A->G | INTERGENIC | None |