Detailed information of SNP:
|
SNP ID:
sf0432691035(Gbrowse)
Chromosome: chr04 Position: 32691035 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1291 | 57.78% | 42.22% |
| All Indica | 682 | 32.70% | 67.30% |
| All Japonica | 495 | 93.74% | 6.26% |
| Aus | 61 | 47.54% | 52.46% |
| Indica I | 307 | 39.41% | 60.59% |
| Indica II | 187 | 16.58% | 83.42% |
| Indica Intermediate | 188 | 37.77% | 62.23% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 67.39% | 32.61% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432691035 | G->A | INTERGENIC | None |