Detailed information of SNP:
|
SNP ID:
sf0432692218(Gbrowse)
Chromosome: chr04 Position: 32692218 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 65.94% | 34.06% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 496 | 20.16% | 79.84% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 334 | 10.18% | 89.82% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432692218 | T->C | INTERGENIC | None |