Detailed information of SNP:
|
SNP ID:
sf0432694711(Gbrowse)
Chromosome: chr04 Position: 32694711 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 69.77% | 30.23% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 27.57% | 72.43% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 15.82% | 84.18% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432694711 | T->C | INTERGENIC | None |