Detailed information of SNP:
|
SNP ID:
sf0432695163(Gbrowse)
Chromosome: chr04 Position: 32695163 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1315 | 79.77% | 20.23% |
| All Indica | 709 | 69.39% | 30.61% |
| All Japonica | 491 | 97.56% | 2.44% |
| Aus | 62 | 67.74% | 32.26% |
| Indica I | 342 | 80.41% | 19.59% |
| Indica II | 176 | 46.59% | 53.41% |
| Indica Intermediate | 191 | 70.68% | 29.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 86.36% | 13.64% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432695163 | G->A | INTERGENIC | None |