Detailed information of SNP:
|
SNP ID:
sf0432732057(Gbrowse)
Chromosome: chr04 Position: 32732057 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 59.72% | 40.28% |
| All Indica | 789 | 90.49% | 9.51% |
| All Japonica | 494 | 10.32% | 89.68% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 372 | 86.02% | 13.98% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 207 | 93.24% | 6.76% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 93 | 35.48% | 64.52% |
| Japonica Intermediate | 66 | 15.15% | 84.85% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432732057 | G->C | LOC_Os04g55340(LOC_Os04g55340.1) | Non-Synonymous SNP |