Detailed information of SNP:
|
SNP ID:
sf0432737831(Gbrowse)
Chromosome: chr04 Position: 32737831 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 95.48% | 4.52% |
| All Indica | 780 | 96.15% | 3.85% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 65 | 63.08% | 36.92% |
| Indica I | 371 | 98.11% | 1.89% |
| Indica II | 202 | 94.06% | 5.94% |
| Indica Intermediate | 207 | 94.69% | 5.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432737831 | C->T | INTERGENIC | None |