Detailed information of SNP:
|
SNP ID:
sf0432768287(Gbrowse)
Chromosome: chr04 Position: 32768287 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1309 | 89.15% | 10.85% |
| All Indica | 793 | 99.12% | 0.88% |
| All Japonica | 393 | 68.45% | 31.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 98.38% | 1.62% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 255 | 54.51% | 45.49% |
| Tropical Japonica | 82 | 98.78% | 1.22% |
| Japonica Intermediate | 56 | 87.50% | 12.50% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432768287 | A->T | INTERGENIC | None |