Detailed information of SNP:
|
SNP ID:
sf0432776101(Gbrowse)
Chromosome: chr04 Position: 32776101 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 68.01% | 31.99% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 24.14% | 75.86% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 15.52% | 84.48% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432776101 | T->C | INTERGENIC | None |