Detailed information of SNP:
|
SNP ID:
sf0432792597(Gbrowse)
Chromosome: chr04 Position: 32792597 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 67.82% | 32.18% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 497 | 23.74% | 76.26% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 20.60% | 79.40% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432792597 | C->T | INTERGENIC | None |