Detailed information of SNP:
|
SNP ID:
sf0432814159(Gbrowse)
Chromosome: chr04 Position: 32814159 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 95.70% | 4.30% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 496 | 88.51% | 11.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 85.03% | 14.97% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432814159 | G->A | LOC_Os04g55480(LOC_Os04g55480.2) | Synonymous |
| sf0432814159 | G->A | LOC_Os04g55480(LOC_Os04g55480.1) | Synonymous |