Detailed information of SNP:
|
SNP ID:
sf0432814342(Gbrowse)
Chromosome: chr04 Position: 32814342 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 62.23% | 37.77% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 497 | 9.05% | 90.95% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432814342 | G->A | LOC_Os04g55480(LOC_Os04g55480.2) | Synonymous |
| sf0432814342 | G->A | LOC_Os04g55480(LOC_Os04g55480.1) | Synonymous |