Detailed information of SNP:
|
SNP ID:
sf0432818757(Gbrowse)
Chromosome: chr04 Position: 32818757 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 62.06% | 37.94% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 497 | 8.45% | 91.55% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432818757 | C->A | INTERGENIC | None |