Detailed information of SNP:
|
SNP ID:
sf0432826459(Gbrowse)
Chromosome: chr04 Position: 32826459 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 62.19% | 37.81% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 8.85% | 91.15% |
| Aus | 64 | 56.25% | 43.75% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432826459 | G->A | LOC_Os04g55500(LOC_Os04g55500.1) | INTRON |