Detailed information of SNP:
|
SNP ID:
sf0432827964(Gbrowse)
Chromosome: chr04 Position: 32827964 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 63.64% | 36.36% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 12.68% | 87.32% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 6.27% | 93.73% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432827964 | A->C | INTERGENIC | None |