Detailed information of SNP:
|
SNP ID:
sf0432832328(Gbrowse)
Chromosome: chr04 Position: 32832328 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 96.72% | 3.28% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 454 | 90.53% | 9.47% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 300 | 99.33% | 0.67% |
| Tropical Japonica | 90 | 66.67% | 33.33% |
| Japonica Intermediate | 64 | 82.81% | 17.19% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432832328 | C->T | INTERGENIC | None |