Detailed information of SNP:
|
SNP ID:
sf0432833773(Gbrowse)
Chromosome: chr04 Position: 32833773 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 61.61% | 38.39% |
| All Indica | 797 | 95.86% | 4.14% |
| All Japonica | 497 | 9.26% | 90.74% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432833773 | C->T | INTERGENIC | None |