Detailed information of SNP:
|
SNP ID:
sf0432841249(Gbrowse)
Chromosome: chr04 Position: 32841249 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 60.93% | 39.07% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 496 | 8.87% | 91.13% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432841249 | T->C | LOC_Os04g55510(LOC_Os04g55510.1) | INTRON |