Detailed information of SNP:
|
SNP ID:
sf0432852880(Gbrowse)
Chromosome: chr04 Position: 32852880 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 60.44% | 39.56% |
| All Indica | 793 | 94.20% | 5.80% |
| All Japonica | 496 | 8.87% | 91.13% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 38.71% | 61.29% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432852880 | G->A | LOC_Os04g55530(LOC_Os04g55530.1) | Synonymous |