Detailed information of SNP:
|
SNP ID:
sf0432859061(Gbrowse)
Chromosome: chr04 Position: 32859061 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 60.89% | 39.11% |
| All Indica | 796 | 93.84% | 6.16% |
| All Japonica | 494 | 8.70% | 91.30% |
| Aus | 57 | 56.14% | 43.86% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 92 | 39.13% | 60.87% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432859061 | A->G | INTERGENIC | None |