Detailed information of SNP:
|
SNP ID:
sf0432863643(Gbrowse)
Chromosome: chr04 Position: 32863643 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1320 | 85.61% | 14.39% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 400 | 55.50% | 44.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 268 | 39.18% | 60.82% |
| Tropical Japonica | 77 | 97.40% | 2.60% |
| Japonica Intermediate | 55 | 76.36% | 23.64% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432863643 | G->C | INTERGENIC | None |