Detailed information of SNP:
|
SNP ID:
sf0432864148(Gbrowse)
Chromosome: chr04 Position: 32864148 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 63.53% | 36.47% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 493 | 13.18% | 86.82% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 92 | 45.65% | 54.35% |
| Japonica Intermediate | 66 | 18.18% | 81.82% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432864148 | T->G | INTERGENIC | None |