Detailed information of SNP:
|
SNP ID:
sf0432898526(Gbrowse)
Chromosome: chr04 Position: 32898526 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 96.05% | 3.95% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 495 | 89.90% | 10.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 86.53% | 13.47% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432898526 | C->T | LOC_Os04g55570(LOC_Os04g55570.1) | Non-Synonymous SNP |