Detailed information of SNP:
|
SNP ID:
sf0432937621(Gbrowse)
Chromosome: chr04 Position: 32937621 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 84.49% | 15.51% |
| All Indica | 799 | 76.22% | 23.78% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432937621 | A->T | INTERGENIC | None |