Detailed information of SNP:
|
SNP ID:
sf0432969356(Gbrowse)
Chromosome: chr04 Position: 32969356 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 63.02% | 36.98% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 496 | 15.12% | 84.88% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 93 | 44.09% | 55.91% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432969356 | G->A | INTERGENIC | None |