Detailed information of SNP:
|
SNP ID:
sf0432999853(Gbrowse)
Chromosome: chr04 Position: 32999853 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.71% | 46.29% |
| All Indica | 798 | 88.47% | 11.53% |
| All Japonica | 496 | 2.22% | 97.78% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0432999853 | G->A | INTERGENIC | None |