Detailed information of SNP:



SNP ID: sf0433007154(Gbrowse)

Chromosome: chr04

Position: 33007154
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1391 53.99% 46.01%
All Indica797 85.45% 14.55%
All Japonica477 5.03% 94.97%
Aus63 30.16% 69.84%
Indica I375 88.27% 11.73%
Indica II211 91.47% 8.53%
Indica Intermediate211 74.41% 25.59%
Temperate Japonica323 3.10% 96.90%
Tropical Japonica89 8.99% 91.01%
Japonica Intermediate65 9.23% 90.77%
Group VI/Aromatic14 42.86% 57.14%
Intermediate40 52.50% 47.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0433007154 T->C INTERGENIC None