Detailed information of SNP:
|
SNP ID:
sf0433007154(Gbrowse)
Chromosome: chr04 Position: 33007154 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 53.99% | 46.01% |
| All Indica | 797 | 85.45% | 14.55% |
| All Japonica | 477 | 5.03% | 94.97% |
| Aus | 63 | 30.16% | 69.84% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 323 | 3.10% | 96.90% |
| Tropical Japonica | 89 | 8.99% | 91.01% |
| Japonica Intermediate | 65 | 9.23% | 90.77% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433007154 | T->C | INTERGENIC | None |