Detailed information of SNP:
|
SNP ID:
sf0433014330(Gbrowse)
Chromosome: chr04 Position: 33014330 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 54.35% | 45.65% |
| All Indica | 795 | 89.18% | 10.82% |
| All Japonica | 495 | 2.63% | 97.37% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 333 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433014330 | C->T | LOC_Os04g55770(LOC_Os04g55770.1) | INTRON |