Detailed information of SNP:
|
SNP ID:
sf0433022786(Gbrowse)
Chromosome: chr04 Position: 33022786 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 66.08% | 33.92% |
| All Indica | 798 | 87.34% | 12.66% |
| All Japonica | 497 | 28.37% | 71.63% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 18.81% | 81.19% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433022786 | T->C | INTERGENIC | None |